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PUBLICATIONS

Articles

  1. Donachie SP, Fraser CJ, Hill EC, Butler MA (2021) The Problem with ‘Microbiome’. Diversity 13(4):138. https://doi.org/10.3390/d13040138

  2. Hayashi K, Busse H-J, Golke J, Anderson J, Wan X, Hou S, Chain PSG, Prescott RD, Donachie SP (2018) Rheinheimera salexigens, sp. nov., from a fishing hook off O‘ahu, Hawai‘i, and emended description of the genus Rheinheimera. International Journal of Systematic and Evolutionary Microbiology 68:35-41 doi: 10.1099/ijsem.0.002412

  3. Arakaki A, Nakata S, Tokuhisa T, Ogawa Y, Sato K, Sonoi T, Donachie SP, Matsunaga T (2017) Quantitative and time-course analysis of microbial degradation of 1H,1H,2H,2H,8H,8H-perfluorododecanol in activated sludge. Applied Microbiology and Biotechnology 101:8259-8266. doi: 10.1007/s00253-017-8538-4.

  4. Grau-Bové X, Torruella G, Donachie SP, Suga H, Leonard G, Richards TA, Ruiz-Trillo I (2017) Dynamics of genomic innovation in the unicellular ancestry of animals. eLife 2017;6:e26036 doi: 10.7554/eLife.26036

  5. Heacock-Kang Y, Sun Z, Zarzycki-Siek J, McMillan I, Norris M, Bluhm A, Cabanas D, Fogen D, Vo H, Donachie SP, Borlee B, Sibley C, Lewenza S, Schurr M, Schweizer H, Hoang T (2017) Spatial transcriptomes within the Pseudomonas aeruginosa biofilm architecture. Molecular Microbiology 106:976–985. http://doi.org/10.1111/mmi.13863

  6. Wan X, Darris M, Hou S, Donachie SP (2017) Draft genome sequence of a novel Chitinophaga sp. Strain, MD30, isolated from a biofilm in an air conditioner condensate pipe. Genome Announcements 5(42), e01161–17. http://doi.org/10.1128/genomeA.01161-17

  7. Beurmann S, Ushijima B, Svoboda CM, Videau P, Smith AM, Donachie SP, Aeby GS, Callahan SM (2017) Pseudoalteromonas piratica sp. nov., a budding, prosthecate bacterium from diseased Montipora capitata, Kāne‘ohe Bay, Hawai‘i, and emended description of the genus Pseudoalteromonas. International Journal of Systematic and Evolutionary Microbiology 67:2683-2688 doi: 10.1099/ijsem.0.001995

  8. Ching TH, Wang R, Masutani S, Donachie SP, Hihara L, Li Q, Yoza B (2016) Biodegradation of biodiesel and microbiologically induced corrosion of '1018' steel by Moniliella wahieum Y12. International Biodeterioration & Biodegradation 108:122-126 https://doi.org/10.1016/j.ibiod.2015.11.027

  9. Wan X, Dasilveira L, Hou S, Saito JA, Donachie SP (2016) Draft genome sequence of Terasakiispira papahanaumokuakeensis PH27AT, a spiral bacterium from the Northwestern Hawaiian Islands. Genome Announcements 4(5):e01166-16; doi: 10.1128/genomeA.01166-16

  10. Wan X, Lee AJ, Hou S, Ushijima B, Nguyen YP, Thawley JA, Donachie SP (2016) Draft genome sequence of Piscirickettsia litoralis, isolated from seawater. Genome Announcements 4(6), e01252–16. http://doi.org/10.1128/genomeA.01252-16

  11. Wan X, Miller JM, Rowley SJ, Hou S, Donachie SP (2016) Draft genome sequence of a novel Luteimonas sp. from coral mucus. Genome Announcements 4(6):e01228-16. doi: 10.1128/genomeA.01228-16

  12. Wan X, Hou S, Burns SL, Saito J, Donachie SP (2016) Draft genome sequence of a novel Marinobacter sp. from Honolulu Harbor, Hawai‘i. Genome Announcements 4(6): e01354-16. doi: 10.1128/genomeA.01354-16

  13. Wan X, Hou S, Hayashi K, Anderson J, Donachie SP (2016) Genome sequence of Rheinheimera salexigens from a fishing hook off O‘ahu, Hawai‘i. Genome Announcements 4(6): e01390-16. doi: 10.1128/genomeA.01390-16

  14. Torruella G, de Mendoza A, Grau-Bové X, Anto M, Chaplin M, del Campo J, Eme L, Pérez-Cordón G, Whipps CM, Nichols KM, Paley R, Roger AJ, Sitjà-Bobadilla A, Donachie SP, Ruiz-Trillo I (2015) Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi. Current Biology 25:2404–2410 doi: 10.1016/j.cub.2015.07.053

  15. Wan X, Hou S, Phan N, Malone Moss JS, Donachie SP, Alam M (2015) Draft genome sequence of Pantoea anthophila strain 11-2 from hypersaline Lake Laysan, Hawai'i. Genome Announcements 3(3):e00321-15. doi: 10.1128/genomeA.00321-15

  16. Wan X, Hou S, Saito J, Kaneshiro KY, Donachie SP (2015) Genome sequence of Flavobacterium akiainvivens IK-1T, from decaying Wikstroemia oahuensis, an endemic Hawaiian shrub. Genome Announcements 3(5):e01222-15. doi:10.1128/genomeA.01222-15

  17. Zepeda VK, Busse H-J, Golke J, Saw J, Alam M, Donachie SP (2015) Terasakiispira papahanaumokuakeensis gen. nov., sp. nov., a Gammaproteobacteria from Pearl and Hermes Atoll, Northwestern Hawaiian Islands. International Journal of Systematic and Evolutionary Microbiology 65:3609-3617 doi: 10.1099/ijsem.0.000438

  18. Saw JHW, Schatz M, Brown MV, Kunkel DD, Foster JS, Shick H, Christensen S, Hou S, Wan X, Donachie SP (2013) Cultivation and complete genome sequencing of Gloeobacter kilaueensis sp. nov., from a lava cave in Kīlauea Caldera, Hawai'i. PLOS ONE 8(10): e76376. doi:10.1371/journal.pone.0076376

  19. Kuo I, Saw J, Kapan DD, Christensen S, Kaneshiro KY, Donachie SP (2013) Flavobacterium akiainvivens sp. nov., from decaying Wikstroemia oahuensis, Hawai‘i, and emended description of the genus Flavobacterium. International Journal of Systematic and Evolutionary Microbiology 63:3280-3286 doi: 10.1099/ijs.0.047217-0

  20. Speck MD, Donachie SP (2012) Widespread Oceanospirillaceae bacteria in Porites spp. Journal of Marine Biology, Vol. 2012, Article ID 746720, 7 pp. doi:10.1155/2012/746720

  21. Kang Y, Norris MH, Zarzycki-Siek J, Nierman WC, Donachie SP, Hoang TT (2011) Transcript amplification from single bacterium for transcriptome analysis. Genome Research doi: 10.1101/gr.116103.110

  22. Brown MV, Philip GK, Bunge JA, Smith MC, Bissett A, Lauro FM, Fuhrman JA, Donachie SP (2009) Microbial community structure in the North Pacific Ocean. ISME Journal 3:1374-1386 doi: 10.1038/ismej.2009.86

  23. Mahdi L, Statzell-Tallman A, Fell JW, Brown MV, Donachie SP (2008) Sympodiomycopsis lanaiensis sp. nov., a basidiomycetous yeast (Ustilaginomycotina: Microstromatales) from marine driftwood in Hawai‘i. FEMS Yeast Research 8:1357-1363 doi: 10.1111/j.1567-1364.2008.00448.x

  24. Brown MV, Donachie SP (2007) Evidence for tropical endemicity in the Deltaproteobacteria Marine Group B/SAR324 bacterioplankton clade. Aquatic Microbial Ecology 46:107-115 doi:10.3354/ame046107

  25. Donachie SP, Foster JS, Brown MV (2007) Culture clash: Challenging the dogma of microbial diversity. ISME Journal 1:97-99 doi:10.1038/ismej.2007.22

  26. Donachie SP, Bowman JP, Alam M (2006) Nesiotobacter exalbescens gen. nov., sp. nov., a moderately thermophilic Alphaproteobacterium from an Hawaiian hypersaline lake. International Journal of Systematic and Evolutionary Microbiology 56:563-567 doi: 10.1099/ijs.0.63440-0

  27. Turkiewicz M, Pazgier M, Donachie SP, Kalinowska H (2005) Invertase and alpha-glucosidase production by the endemic Antarctic marine yeast, Leucosporidium antarcticum. Polish Polar Research 26:125-136

  28. Donachie SP, Bowman JP, On SL, Alam M (2005) Arcobacter halophilus sp. nov., the first obligate halophile in the genus Arcobacter. International Journal of Systematic and Evolutionary Microbiology 55:1271-1277 doi: 10.1099/ijs.0.63581-0

  29. Donachie SP, Hou S, Lee K-S, Riley CW, Pikina A, Belisle C, Kempe S, Gregory TS, Bossuyt A, Boerema J, Liu J, Freitas TA, Malahoff A, Alam M (2004) The Hawaiian Archipelago: A microbial diversity hotspot. Microbial Ecology 48:509-520 DOI: 10.1007/s00248-004-0217-1

  30. Donachie SP, Bowman JP, Alam M (2004) Psychroflexus tropicus, sp. nov., a new, obligately halophilic CFB group bacterium isolated from an Hawaiian hypersaline lake. International Journal of Systematic and Evolutionary Microbiology 54:935-940 DOI: 10.1099/ijs.0.02733-0

  31. Hou S, Saw JH, Lee K-S, Freitas TA, Belisle C, Kawarabayasi Y, Donachie SP, Galperin MY, Koonin EV, Makarova KS, Omelchenko MV, Sorokin A, Wolf Y, Li Q, Keum YS, Campbell S, Denery J, Aizawa S-I, Shibata S, Malahoff A, Alam M (2004) Genome sequence of the deep-sea Gammaproteobacterium Idiomarina loihiensis reveals amino acid fermentation as source of carbon and energy. Proceedings of the National Academy of Sciences USA 101:18036-18041 DOI: 10.1073/pnas.0407638102

  32. Donachie SP, Hou S, Gregory TS, Malahoff A, Alam M (2003) Idiomarina loihiensis, sp. nov., a new halophilic gammaProteobacterium isolated from the Lō‘ihi submarine volcano, Hawai‘i. International Journal of Systematic and Evolutionary Microbiology 53:1873-1879 DOI: 10.1099/ijs.0.02701-0

  33. Donachie SP, Kunkel D, Malahoff A, Christenson B, Alam M (2002) Microbial community in acidic hydrothermal waters of volcanically active White Island, New Zealand. Extremophiles 6:419-425 DOI: 10.1007/s00792-002-0274-7

  34. Malahoff A, Gregory T, Bossuyt A, Donachie SP, Alam M (2002) A seamless system for the collection and cultivation of extremophiles from deep-ocean hydrothermal vents. IEEE Journal of Ocean Engineering 27:862-868 DOI: 10.1109/JOE.2002.804058

  35. Donachie SP, Christian JC, Karl DM (2001) Nutrient regulation of bacterial production and ectoenzyme activities in the subtropical North Pacific Ocean. Deep-Sea Research II 48:1719-1732 doi.org/10.1016/S0967-0645(00)00158-2

  36. Donachie SP, Kinzie III RA, Sadler DW, Bidigare RR, Karl DM (1999) Lake Kauhakō, Moloka‘i, Hawai’i: Biological and chemical aspects of a morphoectogenic meromictic lake. Aquatic Microbial Ecology 19:93-109 doi:10.3354/ame019093

  37. Donachie SP, Zdanowski MK (1998) Potential digestive function of bacteria in krill, Euphausia superba stomach. Aquatic Microbial Ecology 14:129-136 doi:10.3354/ame014129

  38. Donachie SP, Tupas LM, Carrillo CJ, Karl DM, Christian JC (1997) A cross-site study of microbial ectoenzyme activities and regulation: Preliminary results from the Palmer LTER component. Antarctic Journal of the United States 32:148-151

  39. Donachie SP (1996) A seasonal study of marine bacteria in Admiralty Bay (Antarctica). Proceedings of the National Institute of Polar Research Symposium on Polar Biology 9:111-124

  40. Donachie SP, Saborowski R, Peters G, Buchholz F (1995) Bacterial digestive enzyme activity in the stomach and hepatopancreas of Meganyctiphanes norvegica (M. Sars, 1857). Journal of Experimental Marine Biology and Ecology 188:151-165 https://doi.org/10.1016/0022-0981(94)00193-H

  41. Donachie SP (1994) Henryk Arctowski Station: Mixing science and tourism. Annals of Tourism Research 21:333-343 https://doi.org/10.1016/0160-7383(94)90049-3

  42. Zdanowski MK, Donachie SP (1993) Bacteria in the sea-ice zone between Elephant Island and the South Orkneys during the Polish sea-ice zone expedition (December 1988 to January 1989). Polar Biology 13:245-254 https://doi.org/10.1007/BF00238760

  43. Saborowski R, Donachie SP, Peters G, Vetter RAH, Buchholz F (1992) The contribution of bacteria to the production of chitinolytic enzymes in the digestive tract of Meganyctiphanes norvegica. Proceedings of the German Zoological Society 85:164

Book chapters

  1. Mapelli F, Marasco R, Rolli E, Daffonchio D, Donachie SP*, Borin S* (2015) Microbial life in volcanic lakes. In: Rouwet D, Christenson B, Tassi F, Vandemeulebrouck J (eds.) Volcanic Lakes. Springer Berlin Heidelberg, pp. 507-522 [*Joint corresponding authors]

  2. Donachie SP (1995) Ecophysiological description of marine bacteria from Admiralty Bay (Antarctica), and the digestive tracts of selected euphausiidae. In: S Rakusa-Suszczewski & SP Donachie (eds.) Microbiology of Antarctic marine environments and krill intestine, its decomposition and digestive enzymes. Department of Antarctic Biology, Polish Academy of Sciences, Warsaw, pp. 101-196

  3. Donachie SP (1993) Scientific and tourist activities. In: The Maritime Antarctic Coastal Ecosystem of Admiralty Bay. S Rakusa-Suszczewski (ed.). Department of Antarctic Biology, Polish Academy of Sciences, Warsaw, Poland. pp. 213-216

  4. Zdanowski MK, Donachie SP (1993) Bacterioplankton. In: S Rakusa-Suszczewski (ed.) The Maritime Antarctic Coastal Ecosystem of Admiralty Bay. Department of Antarctic Biology, Warsaw pp. 39-44

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